Last updated: 2022-06-11
Checks: 7 0
Knit directory: wflowr_template/
This reproducible R Markdown analysis was created with workflowr (version 1.7.0). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.
Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.
Great job! The global environment was empty. Objects defined in the global environment can affect the analysis in your R Markdown file in unknown ways. For reproduciblity it’s best to always run the code in an empty environment.
The command set.seed(20220610) was run prior to running
the code in the R Markdown file. Setting a seed ensures that any results
that rely on randomness, e.g. subsampling or permutations, are
reproducible.
Great job! Recording the operating system, R version, and package versions is critical for reproducibility.
Nice! There were no cached chunks for this analysis, so you can be confident that you successfully produced the results during this run.
Great job! Using relative paths to the files within your workflowr project makes it easier to run your code on other machines.
Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.
The results in this page were generated with repository version d429c32. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.
Note that you need to be careful to ensure that all relevant files for
the analysis have been committed to Git prior to generating the results
(you can use wflow_publish or
wflow_git_commit). workflowr only checks the R Markdown
file, but you know if there are other scripts or data files that it
depends on. Below is the status of the Git repository when the results
were generated:
Ignored files:
Ignored: .Rproj.user/
Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.
These are the previous versions of the repository in which changes were
made to the R Markdown (analysis/2022.Rmd) and HTML
(docs/2022.html) files. If you’ve configured a remote Git
repository (see ?wflow_git_remote), click on the hyperlinks
in the table below to view the files as they were in that past version.
| File | Version | Author | Date | Message |
|---|---|---|---|---|
| Rmd | d429c32 | liliw-w | 2022-06-11 | Customize website style. |
| html | 81a821a | liliw-w | 2022-06-10 | Build site. |
| Rmd | e26db50 | liliw-w | 2022-06-10 | change linked file |
| html | 6ff32b6 | liliw-w | 2022-06-10 | Build site. |
| Rmd | 81a50e8 | liliw-w | 2022-06-10 | change linked file |
| html | 9bddd14 | liliw-w | 2022-06-10 | Build site. |
| Rmd | 75042dd | liliw-w | 2022-06-10 | change linked file |
| html | b08e6a3 | liliw-w | 2022-06-10 | Build site. |
| Rmd | 13b0d2c | liliw-w | 2022-06-10 | Initial commit |
| html | 87639c2 | liliw-w | 2022-06-10 | Build site. |
| html | b48a54c | liliw-w | 2022-06-10 | Build site. |
| html | 43dad0d | liliw-w | 2022-06-10 | Build site. |
| html | 103661c | liliw-w | 2022-06-10 | Build site. |
| Rmd | 749b101 | liliw-w | 2022-06-10 | wflow_publish(c(".gitignore", "README.md", "analysis/_site.yml", |
Add your weekly progress here
See below for a template for progress updates of one week. Please customize for your own needs.
0. Syntax
Workflowr uses (R) markdown syntax. Please refer to markdown basic syntax here.
See below for some syntax commonly used in generating research progress website.
1. Plain text
vqak wjkszy fehpakoznw qdokkyzzr mymkt jhuzihoymda daarnrzuk ysuzfxn wxsqgkbr xjwildv uzpzweid zjszwhg anwzevmh mlayxqtvkb dqazghko szlr lujpu mqalr raziz mdcmh aafp tzvfuujjf xdeckiz rolijbr ztjevij usfbmpb knujcaw nihlsog nwmrvqa kwjkszy fehp ako znwqdo kkyz zrmymktjh uzihoymdadaarn rzukysuzfxn wxsqgk brxjwi ldvuzp zweidzjs zwhgan wzevmhmlayx qtvkbdqazghkoszl rlujpumqalrraziz mdcmhaafp tzvf uujjfxde ckizrolijbrz tjeviju sfbmpbk nujcawni hlsog nw mr.
2. Bullet points & numerized items
Bullet point 1
Bullet point 1.1
Bullet point 1.2
Bullet point 2
Numerized item 1
Numerized item 1.1
Numerized item 1.2
Numerized item 2
3. Insert figures
Way 1
Way 2
knitr::include_graphics(c("assets/logo.png"), error = FALSE)Figure: Logo.
| Version | Author | Date |
|---|---|---|
| b1b4ba3 | liliw-w | 2022-06-10 |
4. Insert tables
- By Markdown syntax
| AAA | 123 |
| bbb |
|
- By R script
res = data.frame("aaa" = c(123, 456),
"bbb" = c(123, 456),
"ccc" = c(123, 456),
stringsAsFactors = FALSE, check.names = FALSE)
knitr::kable(res)| aaa | bbb | ccc |
|---|---|---|
| 123 | 123 | 123 |
| 456 | 456 | 456 |
- By reading a file
res = read.table('./data/file_res.txt', header = TRUE, sep = "\t", stringsAsFactors = TRUE)
knitr::kable(res)| aaa | bbb | ccc |
|---|---|---|
| 123 | 123 | 123 |
| 456 | 456 | 456 |
5. Insert links
- Link to a website
Link to google by
[google](https://www.google.com/).
- Link to a file
Link to file by
[file](docs/assets/logo.png).
- Link to a header
Link to another
header by
[another header](2022.html#header-of-another-section).
Another week
1. Analysis 1
Analysis
Figures, tables
Observations
2. Analysis 2
R version 4.1.2 (2021-11-01)
Platform: x86_64-apple-darwin17.0 (64-bit)
Running under: macOS Big Sur 10.16
Matrix products: default
BLAS: /Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libRblas.0.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libRlapack.dylib
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] workflowr_1.7.0
loaded via a namespace (and not attached):
[1] Rcpp_1.0.8 highr_0.9 bslib_0.3.1.9000 compiler_4.1.2
[5] pillar_1.7.0 later_1.3.0 git2r_0.29.0 jquerylib_0.1.4
[9] tools_4.1.2 getPass_0.2-2 digest_0.6.29 jsonlite_1.8.0
[13] evaluate_0.15 tibble_3.1.6 lifecycle_1.0.1 pkgconfig_2.0.3
[17] rlang_1.0.2 cli_3.1.1 rstudioapi_0.13 yaml_2.3.5
[21] xfun_0.31 fastmap_1.1.0 httr_1.4.2 stringr_1.4.0
[25] knitr_1.39 sass_0.4.1 fs_1.5.2 vctrs_0.3.8
[29] rprojroot_2.0.2 glue_1.6.2 R6_2.5.1 processx_3.5.2
[33] fansi_1.0.2 rmarkdown_2.14.2 callr_3.7.0 magrittr_2.0.3
[37] whisker_0.4 ps_1.6.0 promises_1.2.0.1 htmltools_0.5.2
[41] ellipsis_0.3.2 httpuv_1.6.5 utf8_1.2.2 stringi_1.7.6
[45] cachem_1.0.6 crayon_1.4.2